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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10183514_10186325_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10183514 - 10186325
Intron Length:
2812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
TTTTATGCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATG
Flanking Amino Acid:
GMDGTVLFVGYAPDIPQNLS
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
81.8
31
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.9
0.74
0.9
76.8
37.1
Minor 5ss
47.8
-0.2
2.5
64
40.7
Minor BPS
60.7
0.19
1.7
68.66
39

Associated Gene:

Gene:
LIFR
Ensembl Gene ID:
ENSAPLG00000007351
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007714
10176479 - 10204145
27667