About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10186456_10188312_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10186456 - 10188312
Intron Length:
1857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATATTAAAAATT
Flanking Amino Acid:
KRGTKYSLFERISGKNVSCE
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
44.4
-0.3
2
65.01
39.5

Associated Gene:

Gene:
LIFR
Ensembl Gene ID:
ENSAPLG00000007351
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007714
10176479 - 10204145
27667