About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10188477_10189680_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10188477 - 10189680
Intron Length:
1204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTAATTTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTTGTTAATT
Flanking Amino Acid:
ASLLVDISQRVHPKTPEKLT
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
69.4
0.44
1.1
71.9
42.6
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
71
0.74
2
91.07
32.9

Associated Gene:

Gene:
LIFR
Ensembl Gene ID:
ENSAPLG00000007351
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007714
10176479 - 10204145
27667