Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10202042_10202597_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10202042 - 10202597

Intron Length:

556

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAATGCC

5'SS Class:

major

3'SS Sequence:

TTCCTCCTTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTAAA

U12 Branch Point Sequence:

TCCTCCTTAAAG

Flanking Amino Acid:

ASIFCYRKREWIKETFYPEI

Intron Amino Acid Position:

686

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.65

68.3

Major BPS

0.47

69.9

32.6

Major PPT

74.2

0.55

74.6

Minor 5ss

33.4

-1.9

3.2

41.4

40.3

Minor BPS

70.5

0.51

1.5

68.4

44.9

Associated Gene:

Gene:

LIFR

Ensembl Gene ID:

ENSAPLG00000007351

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007714

10176479 - 10204145

27667