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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10202677_10203506_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10202677 - 10203506
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACCTG
5'SS Class:
major
3'SS Sequence:
TTTCTTACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTT
Flanking Amino Acid:
ALQFQKNICEGNKTLKTLEM
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
66
45.4
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
87.7
0.85
0.7
86.1
26.7
Minor 5ss
40.8
-1
3.2
55.8
48.4
Minor BPS
75.4
0.88
1.5
91.07
32.9

Associated Gene:

Gene:
LIFR
Ensembl Gene ID:
ENSAPLG00000007351
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007714
10176479 - 10204145
27667