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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10226295_10228780_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10226295 - 10228780
Intron Length:
2486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAACA
Flanking Amino Acid:
LRPFSGSIQKIILNDRTIDV
Intron Amino Acid Position:
786

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71
32.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.1
0.5
1
63.7
41.9
Minor 5ss
34.6
-1.8
3.1
44.1
43.8
Minor BPS
79.4
0.92
1
82.25
33.1

Associated Gene:

Gene:
EGFLAM
Ensembl Gene ID:
ENSAPLG00000010255
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024989
10218491 - 10293583
75093
ENSAPLT00000010710
10218491 - 10293583
75093