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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10228898_10230596_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10228898 - 10230596
Intron Length:
1699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GCTACTCTAATA
Flanking Amino Acid:
KQKPVEGMAEGAFTQIKCSS
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
83.2
30.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
83.3
0.75
0.8
77.8
36
Minor 5ss
37.5
-1.4
3
48.1
47.6
Minor BPS
51.5
0.04
1.7
61.33
39

Associated Gene:

Gene:
EGFLAM
Ensembl Gene ID:
ENSAPLG00000010255
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024989
10218491 - 10293583
75093
ENSAPLT00000010710
10218491 - 10293583
75093