About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10264433_10265077_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
10264433 - 10265077

Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAACCCT

5'SS Class:
major

3'SS Sequence:
TCTTCTGGCATAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTCTAAT

U12 Branch Point Sequence:
GTACCTCTAATG

Flanking Amino Acid:
MPRDVTTLSQDNCMPPAPPY

Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.1
0.69
1
68.7
42.2

Major BPS
82.2
0.8
0.9
81.6
27

Major PPT
68.2
0.41
0.9
64.3
36.7

Minor 5ss
39.9
-1.1
3.2
57.5
46.7

Minor BPS
49.5
-0.1
1.7
55.41
39.7

Associated Gene:

Gene:
EGFLAM

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

10218491 - 10293583
75093

10218491 - 10293583
75093