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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10400924_10402041_R

Intron Information:

Intron Rank:
150556
Intron Class:
major
Intron Phase:
Intron Coordinates:
10400924 - 10402041
Intron Length:
1118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTTTCACTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
73.7
0.53
1
78.7
33.2
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
57.8
0.33
2
81.53
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028493
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026439
10400850 - 10406696
5847