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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10513909_10521521_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10513909 - 10521521
Intron Length:
7613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
TAATATTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTATTTTAATC
Flanking Amino Acid:
NPYWVAPAYAKTQPKTVFAE
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
72.4
38.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.7
0.56
0.9
66.5
44.3
Minor 5ss
33.3
-1.9
3.2
39.9
40.1
Minor BPS
68.5
0.56
1.2
72.73
32

Associated Gene:

Gene:
WDR70
Ensembl Gene ID:
ENSAPLG00000010164
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029844
10513824 - 10650620
136797
ENSAPLT00000019666
10513824 - 10650620
136797
ENSAPLT00000010607
10513824 - 10650747
136924