About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10521685_10522042_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10521685 - 10522042
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAG
5'SS Class:
major
3'SS Sequence:
TTTTTTGCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AGTCATTTAATT
Flanking Amino Acid:
HKPEPPVAGPGRGGRVGTHG
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89
0.88
0.8
84.3
30.8
Minor 5ss
36.1
-1.6
3.2
46.5
48.8
Minor BPS
60.8
0.42
1.5
73.81
36.7

Associated Gene:

Gene:
WDR70
Ensembl Gene ID:
ENSAPLG00000010164
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029844
10513824 - 10650620
136797
ENSAPLT00000019666
10513824 - 10650620
136797
ENSAPLT00000010607
10513824 - 10650747
136924