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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10522160_10524279_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10522160 - 10524279
Intron Length:
2120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGGAAT
5'SS Class:
major
3'SS Sequence:
TGTGACTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTTCTTTATCT
Flanking Amino Acid:
ETLTQDYIITPHALPMFREP
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
78.6
37.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
70.8
0.47
0.9
66.9
40.2
Minor 5ss
35.3
-1.7
3.3
47.8
41.5
Minor BPS
74.4
0.84
1.5
88.63
36.3

Associated Gene:

Gene:
WDR70
Ensembl Gene ID:
ENSAPLG00000010164
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019666
10513824 - 10650620
136797
ENSAPLT00000010607
10513824 - 10650747
136924
ENSAPLT00000029844
10513824 - 10650620
136797