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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10524360_10525854_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10524360 - 10525854
Intron Length:
1495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
ACCAACTGAACT
Flanking Amino Acid:
KVYYDPVKSQRGAKLCVVKT
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
80.3
0.68
0.8
73.8
36.9
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
50
0.08
1.7
65.24
44.6

Associated Gene:

Gene:
WDR70
Ensembl Gene ID:
ENSAPLG00000010164
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019666
10513824 - 10650620
136797
ENSAPLT00000010607
10513824 - 10650747
136924
ENSAPLT00000029844
10513824 - 10650620
136797