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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10544578_10550211_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10544578 - 10550211
Intron Length:
5634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TTCTTGCTAACC
Flanking Amino Acid:
YDGTALASRGGDDTLKMWDI
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
76.7
0.6
0.9
73.2
36.4
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
49.7
-0
2.3
70.31
41.4

Associated Gene:

Gene:
WDR70
Ensembl Gene ID:
ENSAPLG00000010164
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019666
10513824 - 10650620
136797
ENSAPLT00000010607
10513824 - 10650747
136924
ENSAPLT00000029844
10513824 - 10650620
136797