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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10601779_10604062_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10601779 - 10604062
Intron Length:
2284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTGTTTATTT
Flanking Amino Acid:
QYIVDMTNTKGHTAMLNSGC
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
70.2
40.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.9
0.72
0.7
81.6
30.2
Minor 5ss
32
-2.1
3.2
43
44.2
Minor BPS
53.7
0.19
2
74.92
43

Associated Gene:

Gene:
WDR70
Ensembl Gene ID:
ENSAPLG00000010164
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019666
10513824 - 10650620
136797
ENSAPLT00000010607
10513824 - 10650747
136924
ENSAPLT00000029844
10513824 - 10650620
136797