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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10662804_10663837_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10662804 - 10663837
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTCTTTTATT
Flanking Amino Acid:
GPILGSPISAVTGQCGRRHH
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
83.8
0.76
0.9
81.6
35.8
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
69.8
0.7
1.5
84.47
36.2

Associated Gene:

Gene:
NUP155
Ensembl Gene ID:
ENSAPLG00000008857
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025158
10650337 - 10679824
29488