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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10662804_10665558_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10662804 - 10665558
Intron Length:
2755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
ACAAACAAAAAA
Flanking Amino Acid:
GPILGSPISAVSQLAVDTPY
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
83.4
0.75
0.7
81.5
30.4
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
37.9
-0.9
1.9
43.03
37.5

Associated Gene:

Gene:
NUP155
Ensembl Gene ID:
ENSAPLG00000008857
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009327
10650337 - 10679824
29488