Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10667398_10668406_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10667398 - 10668406

Intron Length:

1009

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGCAAT

5'SS Class:

major

3'SS Sequence:

CTTTCTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TATTTATTGACA

Flanking Amino Acid:

VQQELQRKYHAEAQLTEKTS

Intron Amino Acid Position:

987

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

72.3

38.6

Major BPS

88.7

0.96

0.8

36.5

Major PPT

93.1

0.97

0.6

91.8

Minor 5ss

47.3

-0.3

2.6

62.6

43.4

Minor BPS

65.9

0.49

1.6

76.21

34.1

Associated Gene:

Gene:

NUP155

Ensembl Gene ID:

ENSAPLG00000008857

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025158

10650337 - 10679824

29488

ENSAPLT00000009327

10650337 - 10679824

29488