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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10670975_10671365_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10670975 - 10671365
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CATTTATCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCCCATCATT
Flanking Amino Acid:
YSTDDAVCSKANELLQRSRQ
Intron Amino Acid Position:
1096

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
100
1.24
0.5
100
0
Major PPT
76.2
0.59
0.8
70.7
34.7
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
57
0.3
2
82.51
38.8

Associated Gene:

Gene:
NUP155
Ensembl Gene ID:
ENSAPLG00000008857
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025158
10650337 - 10679824
29488
ENSAPLT00000009327
10650337 - 10679824
29488