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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10686935_10687257_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10686935 - 10687257
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGTTTTTCCACA
Flanking Amino Acid:
GVHAAFIQNEVLGDCCLCSF
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
49.7
-0
1.9
67.57
39.2

Associated Gene:

Gene:
CPLANE1
Ensembl Gene ID:
ENSAPLG00000008819
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009175
10683828 - 10739970
56143