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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10695029_10695174_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10695029 - 10695174
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCAAAAAGT
5'SS Class:
major
3'SS Sequence:
TCTTGAACTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTTCTTGAACT
Flanking Amino Acid:
QCVLIKKQNPGLVVLWRLLY
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.3
67.7
42.7
Major BPS
100
1.24
0.5
100
0
Major PPT
74.4
0.55
0.9
66.6
38.5
Minor 5ss
23.8
-3
3.9
31.7
42.4
Minor BPS
72.1
0.77
1.4
83.15
37.9

Associated Gene:

Gene:
CPLANE1
Ensembl Gene ID:
ENSAPLG00000008819
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009175
10683828 - 10739970
56143