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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10697819_10701397_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10697819 - 10701397
Intron Length:
3579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
GTTTGTGTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCCATTTAAACT
Flanking Amino Acid:
DILHPLHIEPDISSRIIPLQ
Intron Amino Acid Position:
949

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
75.8
0.58
1
72.8
42.2
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
51.8
0.13
1.7
67.12
44.4

Associated Gene:

Gene:
CPLANE1
Ensembl Gene ID:
ENSAPLG00000008819
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009175
10683828 - 10739970
56143