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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10701999_10704710_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10701999 - 10704710
Intron Length:
2712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TAATATTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTGTGTTTAATA
Flanking Amino Acid:
EGDLKYKQFTDPIEEEDANV
Intron Amino Acid Position:
1072

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.3
0.57
0.9
69.5
40.9
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
58.5
0.26
1.8
66.12
41.6

Associated Gene:

Gene:
CPLANE1
Ensembl Gene ID:
ENSAPLG00000008819
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009175
10683828 - 10739970
56143