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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10707770_10708577_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10707770 - 10708577
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
AAGTGTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTATGTCAATT
Flanking Amino Acid:
TARENTNMHKDLKKNEYGTS
Intron Amino Acid Position:
1283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
70
0.45
1
66.6
44.2
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
49.5
0.04
2.2
76.38
40.7

Associated Gene:

Gene:
CPLANE1
Ensembl Gene ID:
ENSAPLG00000008819
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009175
10683828 - 10739970
56143