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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10716863_10718033_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10716863 - 10718033
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATGTTTCTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.9
32.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
82.4
0.73
0.7
81.2
30.9
Minor 5ss
36.8
-1.5
3
39
46.2
Minor BPS
59.4
0.29
1.6
69.72
36.7

Associated Gene:

Gene:
CPLANE1
Ensembl Gene ID:
ENSAPLG00000008819
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009039
10715206 - 10728946
13741