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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10725675_10725934_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10725675 - 10725934
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCAT
5'SS Class:
major
3'SS Sequence:
CTTTCCCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATCCACT
Flanking Amino Acid:
AIPPEPLQKKDNHPKDMSSQ
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
71.2
40.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
81.7
0.71
0.7
73.9
31.2
Minor 5ss
38.9
-1.2
3.3
55.8
48.4
Minor BPS
50.5
0.1
2.3
78.64
43

Associated Gene:

Gene:
CPLANE1
Ensembl Gene ID:
ENSAPLG00000008819
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009039
10715206 - 10728946
13741