Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10727600_10728677_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10727600 - 10728677

Intron Length:

1078

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGTGTA

5'SS Class:

strong_major

3'SS Sequence:

TTCATTGGATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTTTTTCATT

Flanking Amino Acid:

FSEVASIIGDEHYVRAMISE

Intron Amino Acid Position:

268

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

75.9

33.3

Major BPS

100

1.24

0.5

100

Major PPT

66.3

0.37

1.1

66.1

Minor 5ss

42.5

-0.8

3.1

54.4

45.2

Minor BPS

67.5

0.63

1.7

86.64

33.8

Associated Gene:

Gene:

CPLANE1

Ensembl Gene ID:

ENSAPLG00000008819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009039

10715206 - 10728946

13741