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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10731788_10733405_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10731788 - 10733405
Intron Length:
1618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTTAGTGGT
5'SS Class:
major
3'SS Sequence:
TTGCAATTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTTTGCAATT
Flanking Amino Acid:
ITDLNGVTDINMLGYFSFTC
Intron Amino Acid Position:
2342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.3
63
41.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
65
0.34
1.1
63.9
40.8
Minor 5ss
33.3
-1.9
3.2
48.1
41.9
Minor BPS
47.8
-0
2.1
70.83
41.3

Associated Gene:

Gene:
CPLANE1
Ensembl Gene ID:
ENSAPLG00000008819
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009175
10683828 - 10739970
56143