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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10733610_10735221_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10733610 - 10735221
Intron Length:
1612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAACA
5'SS Class:
major
3'SS Sequence:
CTTTCTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
CTTTCTTCCACA
Flanking Amino Acid:
HNPFNLRKNMHCSPTSKDIK
Intron Amino Acid Position:
2410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
67
38.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
84.5
0.78
0.7
79.8
25.8
Minor 5ss
32.5
-2
3.1
37.8
41
Minor BPS
54.9
0.15
2
71.01
41.7

Associated Gene:

Gene:
CPLANE1
Ensembl Gene ID:
ENSAPLG00000008819
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009175
10683828 - 10739970
56143