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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10735284_10735860_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10735284 - 10735860
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TAATACATAATA
Flanking Amino Acid:
IFRKKKEEKDKVLLSEHHSM
Intron Amino Acid Position:
2430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
79.4
0.73
1
80.1
32
Major PPT
81.3
0.7
0.8
76.2
32.1
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
55.8
0.18
1.8
68.01
37.6

Associated Gene:

Gene:
CPLANE1
Ensembl Gene ID:
ENSAPLG00000008819
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009175
10683828 - 10739970
56143