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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10754991_10755639_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10754991 - 10755639
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTTTTTGTT
Flanking Amino Acid:
KRSIVKQYLDFKLLMEHLDP
Intron Amino Acid Position:
2390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
89.3
0.88
0.7
88.9
28.2
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
44
-0.3
3.5
78.64
38.7

Associated Gene:

Gene:
NIPBL
Ensembl Gene ID:
ENSAPLG00000008108
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008820
10753873 - 10861034
107162
ENSAPLT00000008435
10753873 - 10861034
107162