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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10756439_10757865_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10756439 - 10757865
Intron Length:
1427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTCTGTTAATT
Flanking Amino Acid:
GSNLLQSFKESMVKDKKKER
Intron Amino Acid Position:
2233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80.8
0.69
0.7
75.3
26.8
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
57.5
0.31
2
77.64
39

Associated Gene:

Gene:
NIPBL
Ensembl Gene ID:
ENSAPLG00000008108
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008820
10753873 - 10861034
107162
ENSAPLT00000008435
10753873 - 10861034
107162