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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10758013_10758451_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10758013 - 10758451
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGCATC
5'SS Class:
major
3'SS Sequence:
TCTTTAATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTTAATT
Flanking Amino Acid:
SLLNLFDDTAKTEVNMLLYI
Intron Amino Acid Position:
2184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
70.3
40.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83
0.74
0.8
74.6
39
Minor 5ss
46.1
-0.4
2.9
66.8
38
Minor BPS
90.6
1.35
0.7
99.65
21.1

Associated Gene:

Gene:
NIPBL
Ensembl Gene ID:
ENSAPLG00000008108
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008820
10753873 - 10861034
107162
ENSAPLT00000008435
10753873 - 10861034
107162