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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10758653_10760038_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10758653 - 10760038
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATTGTTTAAAT
Flanking Amino Acid:
IDKKYAGFIHMKAVAGMKMS
Intron Amino Acid Position:
2117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
87
30
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
88.3
0.86
0.7
86.1
26.6
Minor 5ss
38.8
-1.3
2.8
50.6
39.2
Minor BPS
59.9
0.39
1.8
76.83
39.5

Associated Gene:

Gene:
NIPBL
Ensembl Gene ID:
ENSAPLG00000008108
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008820
10753873 - 10861034
107162
ENSAPLT00000008435
10753873 - 10861034
107162