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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10774347_10775555_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10774347 - 10775555
Intron Length:
1209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGTGA
5'SS Class:
major
3'SS Sequence:
TTTATCCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAAGA
Flanking Amino Acid:
YYDMLIERILDTGISVRKRV
Intron Amino Acid Position:
1621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
61
40
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.5
0.73
0.8
76.7
31.9
Minor 5ss
42.3
-0.8
3.1
52.5
46.6
Minor BPS
52.8
0.08
1.8
66.45
40.7

Associated Gene:

Gene:
NIPBL
Ensembl Gene ID:
ENSAPLG00000008108
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008820
10753873 - 10861034
107162
ENSAPLT00000008435
10753873 - 10861034
107162