About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10786478_10786891_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10786478 - 10786891
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCATTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTGATA
Flanking Amino Acid:
QLLTDTTILQVSSMGITPFF
Intron Amino Acid Position:
1176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
69.5
0.44
1
65.8
40
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
61.9
0.37
1.7
75.33
36.1

Associated Gene:

Gene:
NIPBL
Ensembl Gene ID:
ENSAPLG00000008108
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008820
10753873 - 10861034
107162
ENSAPLT00000008435
10753873 - 10861034
107162