Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10796530_10811979_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10796530 - 10811979

Intron Length:

15450

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATTA

5'SS Class:

strong_major

3'SS Sequence:

TCTCCATTAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCACAT

U12 Branch Point Sequence:

TCTCCATTAATA

Flanking Amino Acid:

NKNKSSKSNKGSIDQSVLKE

Intron Amino Acid Position:

803

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.3

1.02

0.7

86.9

22.8

Major BPS

77.7

0.69

83.3

27.7

Major PPT

70.4

0.46

0.9

66.3

33.3

Minor 5ss

41.5

-0.9

3.1

48.2

Minor BPS

66.2

0.5

1.6

74.1

37.5

Associated Gene:

Gene:

NIPBL

Ensembl Gene ID:

ENSAPLG00000008108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008820

10753873 - 10861034

107162

ENSAPLT00000008435

10753873 - 10861034

107162