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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10836718_10845105_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10836718 - 10845105
Intron Length:
8388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTTCC
5'SS Class:
major
3'SS Sequence:
ATTGTCACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATAATGTTAATT
Flanking Amino Acid:
LQMVHRLSSDDGDPSIRNAA
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
70.5
34.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.7
0.49
0.9
68.4
38
Minor 5ss
50
0
2.3
66.7
37.4
Minor BPS
52
0.14
2
71.47
39.7

Associated Gene:

Gene:
NIPBL
Ensembl Gene ID:
ENSAPLG00000008108
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008820
10753873 - 10861034
107162
ENSAPLT00000008435
10753873 - 10861034
107162