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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10848683_10855154_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10848683 - 10855154
Intron Length:
6472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTCTTTTTAATA
Flanking Amino Acid:
SMQNRYGVQSGIMMSQFSIS
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
82.5
0.73
0.8
80.9
29.7
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
75.4
0.79
1.1
78
33.3

Associated Gene:

Gene:
NIPBL
Ensembl Gene ID:
ENSAPLG00000008108
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008820
10753873 - 10861034
107162
ENSAPLT00000008435
10753873 - 10861034
107162