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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11013961_11016027_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11013961 - 11016027
Intron Length:
2067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGAAG
5'SS Class:
major
3'SS Sequence:
TCTCTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AGTCAATTAATT
Flanking Amino Acid:
DLNFGQIITISITATAASIG
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
63.1
42.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.1
0.86
0.6
87.5
22.8
Minor 5ss
29.9
-2.3
3.3
38.8
46.5
Minor BPS
52.8
0.17
1.8
71.57
38.6

Associated Gene:

Gene:
SLC1A3
Ensembl Gene ID:
ENSAPLG00000007513
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007816
11012358 - 11074579
62222