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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11016223_11018316_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11016223 - 11018316
Intron Length:
2094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAACAC
5'SS Class:
major
3'SS Sequence:
CTTTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAT
U12 Branch Point Sequence:
CATGCGTTATCT
Flanking Amino Acid:
ALVTALGTSSSSATLPVTFK
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.48
1.1
59.5
39.7
Major BPS
70.5
0.51
1.3
74
41.2
Major PPT
89.4
0.89
0.8
88
29.4
Minor 5ss
30.5
-2.2
3.3
41.8
45
Minor BPS
47.4
-0.1
2.4
68.52
48.1

Associated Gene:

Gene:
SLC1A3
Ensembl Gene ID:
ENSAPLG00000007513
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007816
11012358 - 11074579
62222