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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11018551_11020443_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11018551 - 11020443
Intron Length:
1893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
AATTTCTTATTT
Flanking Amino Acid:
AIMRLVALIMWYAPLGILFL
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
89.3
0.88
0.7
84.8
28.8
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
66.2
0.59
1.5
79.09
37.2

Associated Gene:

Gene:
SLC1A3
Ensembl Gene ID:
ENSAPLG00000007513
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007816
11012358 - 11074579
62222