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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11020740_11028202_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11020740 - 11028202
Intron Length:
7463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ATTTCCATATTT
Flanking Amino Acid:
PNLVEACFKQFKTNYEKRMF
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
83.5
0.75
0.9
78
40.1
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
62.3
0.46
1.9
83.51
37.5

Associated Gene:

Gene:
SLC1A3
Ensembl Gene ID:
ENSAPLG00000007513
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007816
11012358 - 11074579
62222