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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11028246_11029642_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11028246 - 11029642
Intron Length:
1397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCTTTCACA
Flanking Amino Acid:
TAADAFLDLIRNMFPPNLVE
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.1
0.83
0.7
83
25.6
Minor 5ss
43.9
-0.7
2.8
58.4
46.1
Minor BPS
68.9
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
SLC1A3
Ensembl Gene ID:
ENSAPLG00000007513
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007816
11012358 - 11074579
62222