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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11053645_11072022_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11053645 - 11072022
Intron Length:
18378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
AATGTTATGACT
Flanking Amino Acid:
VLFTVVAVILGVILGFSLRS
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
85
0.79
0.7
77
31.7
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
48.4
-0
1.7
66.23
38.5

Associated Gene:

Gene:
SLC1A3
Ensembl Gene ID:
ENSAPLG00000007513
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007816
11012358 - 11074579
62222