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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_111126_112077_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111126 - 112077
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTAGA
5'SS Class:
major
3'SS Sequence:
GTTTCATCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATTTCTAAAAT
Flanking Amino Acid:
EWCFGLVIYAGPDTKLMQNS
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
66.8
40.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.9
0.67
0.9
70.6
40.1
Minor 5ss
28.4
-2.5
2.8
30
37.8
Minor BPS
64.4
0.53
1.8
82.08
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002472
93540 - 123944
30405