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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11207579_11207844_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11207579 - 11207844
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TTCTCCTTGACC
Flanking Amino Acid:
VFEKKDRPLKRPAEEPVCKA
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
71.3
0.53
1
61.3
37
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
84.3
1.06
1
85.95
32.4

Associated Gene:

Gene:
RANBP3L
Ensembl Gene ID:
ENSAPLG00000008111
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008418
11194357 - 11231455
37099
ENSAPLT00000008414
11194357 - 11233895
39539