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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11221797_11227364_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11221797 - 11227364
Intron Length:
5568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTAGTTTTGACT
Flanking Amino Acid:
DHSVQVFLIQASSKDAGYLY
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76.1
35
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
89
0.88
0.7
85
29.8
Minor 5ss
38.8
-1.3
2.8
48.7
47.1
Minor BPS
65
0.55
1.3
78.71
38

Associated Gene:

Gene:
RANBP3L
Ensembl Gene ID:
ENSAPLG00000008111
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008418
11194357 - 11231455
37099
ENSAPLT00000008414
11194357 - 11233895
39539