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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11227555_11231420_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11227555 - 11231420
Intron Length:
3866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGTTTGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTGACATTATTT
Flanking Amino Acid:
KITQVSSSGSESSANRMGNA
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
59.9
0.22
1.7
68.8
41.9
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
52.8
0.16
1.9
73.9
43

Associated Gene:

Gene:
RANBP3L
Ensembl Gene ID:
ENSAPLG00000008111
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008418
11194357 - 11231455
37099