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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11227555_11233851_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11227555 - 11233851
Intron Length:
6297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
AATTCTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTATTAAAAATT
Flanking Amino Acid:
KITQVSSSGSDHSRWNRRQP
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.7
0.65
0.9
75
38.8
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
46.3
-0.2
2.1
70.5
40.5

Associated Gene:

Gene:
RANBP3L
Ensembl Gene ID:
ENSAPLG00000008111
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008414
11194357 - 11233895
39539